Changes from 2.0

New (and hopefully clearer!) Syntax

Instead of calling various shell scripts (slurmrunner.pl for slurm submission, pbsrunner.pl for pbs submission, mcerunner.pl for job execution) now call a single script with commands.

hpcrunner.pl new ProjectName
hpcrunner.pl submit_jobs --infile submission_file
hpcrunner.pl execute_job --infile job_file

Nested workflow submission

Previously workflows could only have linear dependencies, with each job depending upon the previous. Now jobs can depend upon any job in the workflow.

Git versioning of job runs

If chosen each run can be a git version. You can use all the usual git tools to track differences between job submissions, archive certain submissions, create branches of analyses, etc.